Almost got a full sync, still need the adjustment heuristic

9 files changed, 36 insertions, 23 deletions

diff --git a/package/deps.mak b/package/deps.mak
index beb76b4..3175904 100644
--- a/package/deps.mak
+++ b/package/deps.mak
@@ -22,7 +22,7 @@ src/libs6rc/s6rc_nlto0.o src/libs6rc/s6rc_nlto0.lo: src/libs6rc/s6rc_nlto0.c src
 src/libs6rc/s6rc_read_uint.o src/libs6rc/s6rc_read_uint.lo: src/libs6rc/s6rc_read_uint.c src/include/s6-rc/s6rc-utils.h
 src/libs6rc/s6rc_repo_cleanup.o src/libs6rc/s6rc_repo_cleanup.lo: src/libs6rc/s6rc_repo_cleanup.c src/include/s6-rc/repo.h
 src/libs6rc/s6rc_repo_compile.o src/libs6rc/s6rc_repo_compile.lo: src/libs6rc/s6rc_repo_compile.c src/include/s6-rc/config.h src/include/s6-rc/repo.h
-src/libs6rc/s6rc_repo_fillset.o src/libs6rc/s6rc_repo_fillset.lo: src/libs6rc/s6rc_repo_fillset.c src/include/s6-rc/repo.h
+src/libs6rc/s6rc_repo_fillset.o src/libs6rc/s6rc_repo_fillset.lo: src/libs6rc/s6rc_repo_fillset.c src/include/s6-rc/repo.h src/include/s6-rc/s6rc-utils.h
 src/libs6rc/s6rc_repo_listalldeps.o src/libs6rc/s6rc_repo_listalldeps.lo: src/libs6rc/s6rc_repo_listalldeps.c src/include/s6-rc/repo.h
 src/libs6rc/s6rc_repo_listcontents.o src/libs6rc/s6rc_repo_listcontents.lo: src/libs6rc/s6rc_repo_listcontents.c src/include/s6-rc/config.h src/include/s6-rc/repo.h src/include/s6-rc/s6rc-utils.h
 src/libs6rc/s6rc_repo_listdeps.o src/libs6rc/s6rc_repo_listdeps.lo: src/libs6rc/s6rc_repo_listdeps.c src/include/s6-rc/repo.h
@@ -30,7 +30,7 @@ src/libs6rc/s6rc_repo_listdeps_internal.o src/libs6rc/s6rc_repo_listdeps_interna
 src/libs6rc/s6rc_repo_listsub.o src/libs6rc/s6rc_repo_listsub.lo: src/libs6rc/s6rc_repo_listsub.c src/include/s6-rc/repo.h
 src/libs6rc/s6rc_repo_lock.o src/libs6rc/s6rc_repo_lock.lo: src/libs6rc/s6rc_repo_lock.c src/include/s6-rc/repo.h
 src/libs6rc/s6rc_repo_makedefbundle.o src/libs6rc/s6rc_repo_makedefbundle.lo: src/libs6rc/s6rc_repo_makedefbundle.c src/include/s6-rc/repo.h
-src/libs6rc/s6rc_repo_makesetbundles.o src/libs6rc/s6rc_repo_makesetbundles.lo: src/libs6rc/s6rc_repo_makesetbundles.c src/include/s6-rc/repo.h
+src/libs6rc/s6rc_repo_makesetbundles.o src/libs6rc/s6rc_repo_makesetbundles.lo: src/libs6rc/s6rc_repo_makesetbundles.c src/include/s6-rc/repo.h src/include/s6-rc/s6rc-utils.h
 src/libs6rc/s6rc_repo_moveservices.o src/libs6rc/s6rc_repo_moveservices.lo: src/libs6rc/s6rc_repo_moveservices.c src/include/s6-rc/repo.h
 src/libs6rc/s6rc_repo_refcompile.o src/libs6rc/s6rc_repo_refcompile.lo: src/libs6rc/s6rc_repo_refcompile.c src/include/s6-rc/repo.h
 src/libs6rc/s6rc_repo_setcompile.o src/libs6rc/s6rc_repo_setcompile.lo: src/libs6rc/s6rc_repo_setcompile.c src/include/s6-rc/repo.h
@@ -44,6 +44,7 @@ src/libs6rc/s6rc_servicedir_internal.o src/libs6rc/s6rc_servicedir_internal.lo:
 src/libs6rc/s6rc_servicedir_manage.o src/libs6rc/s6rc_servicedir_manage.lo: src/libs6rc/s6rc_servicedir_manage.c src/include/s6-rc/s6rc-servicedir.h
 src/libs6rc/s6rc_servicedir_unblock.o src/libs6rc/s6rc_servicedir_unblock.lo: src/libs6rc/s6rc_servicedir_unblock.c src/include/s6-rc/s6rc-servicedir.h
 src/libs6rc/s6rc_servicedir_unsupervise.o src/libs6rc/s6rc_servicedir_unsupervise.lo: src/libs6rc/s6rc_servicedir_unsupervise.c src/include/s6-rc/s6rc-servicedir.h
+src/libs6rc/s6rc_strrefcmp.o src/libs6rc/s6rc_strrefcmp.lo: src/libs6rc/s6rc_strrefcmp.c src/include/s6-rc/s6rc-utils.h
 src/libs6rc/s6rc_type_check.o src/libs6rc/s6rc_type_check.lo: src/libs6rc/s6rc_type_check.c src/include/s6-rc/s6rc-utils.h
 src/repo/s6-rc-repo-init.o src/repo/s6-rc-repo-init.lo: src/repo/s6-rc-repo-init.c src/include/s6-rc/config.h src/include/s6-rc/s6rc.h
 src/repo/s6-rc-set-copy.o src/repo/s6-rc-set-copy.lo: src/repo/s6-rc-set-copy.c src/include/s6-rc/config.h src/include/s6-rc/s6rc.h
@@ -62,15 +63,15 @@ src/s6-rc/s6-rc-update.o src/s6-rc/s6-rc-update.lo: src/s6-rc/s6-rc-update.c src
 src/s6-rc/s6-rc.o src/s6-rc/s6-rc.lo: src/s6-rc/s6-rc.c src/include/s6-rc/config.h src/include/s6-rc/s6rc.h
 
 ifeq ($(strip $(STATIC_LIBS_ARE_PIC)),)
-libs6rc.a.xyzzy: src/libs6rc/s6rc_db_check_depcycles.o src/libs6rc/s6rc_db_check_pipelines.o src/libs6rc/s6rc_db_check_revdeps.o src/libs6rc/s6rc_db_read.o src/libs6rc/s6rc_db_read_sizes.o src/libs6rc/s6rc_db_read_uint32.o src/libs6rc/s6rc_graph_closure.o src/libs6rc/s6rc_live_state_size.o src/libs6rc/s6rc_live_state_read.o src/libs6rc/s6rc_livedir_canon.o src/libs6rc/s6rc_livedir_create.o src/libs6rc/s6rc_livedir_prefix.o src/libs6rc/s6rc_livedir_prefixsize.o src/libs6rc/s6rc_lock.o src/libs6rc/s6rc_nlto0.o src/libs6rc/s6rc_read_uint.o src/libs6rc/s6rc_repo_cleanup.o src/libs6rc/s6rc_repo_compile.o src/libs6rc/s6rc_repo_fillset.o src/libs6rc/s6rc_repo_listalldeps.o src/libs6rc/s6rc_repo_listcontents.o src/libs6rc/s6rc_repo_listdeps.o src/libs6rc/s6rc_repo_listdeps_internal.o src/libs6rc/s6rc_repo_listsub.o src/libs6rc/s6rc_repo_lock.o src/libs6rc/s6rc_repo_makedefbundle.o src/libs6rc/s6rc_repo_makesetbundles.o src/libs6rc/s6rc_repo_moveservices.o src/libs6rc/s6rc_repo_refcompile.o src/libs6rc/s6rc_repo_setcompile.o src/libs6rc/s6rc_repo_sublist.o src/libs6rc/s6rc_repo_sync.o src/libs6rc/s6rc_sanitize_dir.o src/libs6rc/s6rc_servicedir_internal.o src/libs6rc/s6rc_servicedir_block.o src/libs6rc/s6rc_servicedir_unblock.o src/libs6rc/s6rc_servicedir_copy_offline.o src/libs6rc/s6rc_servicedir_copy_online.o src/libs6rc/s6rc_servicedir_manage.o src/libs6rc/s6rc_servicedir_unsupervise.o src/libs6rc/s6rc_type_check.o
+libs6rc.a.xyzzy: src/libs6rc/s6rc_db_check_depcycles.o src/libs6rc/s6rc_db_check_pipelines.o src/libs6rc/s6rc_db_check_revdeps.o src/libs6rc/s6rc_db_read.o src/libs6rc/s6rc_db_read_sizes.o src/libs6rc/s6rc_db_read_uint32.o src/libs6rc/s6rc_graph_closure.o src/libs6rc/s6rc_live_state_size.o src/libs6rc/s6rc_live_state_read.o src/libs6rc/s6rc_livedir_canon.o src/libs6rc/s6rc_livedir_create.o src/libs6rc/s6rc_livedir_prefix.o src/libs6rc/s6rc_livedir_prefixsize.o src/libs6rc/s6rc_lock.o src/libs6rc/s6rc_nlto0.o src/libs6rc/s6rc_read_uint.o src/libs6rc/s6rc_repo_cleanup.o src/libs6rc/s6rc_repo_compile.o src/libs6rc/s6rc_repo_fillset.o src/libs6rc/s6rc_repo_listalldeps.o src/libs6rc/s6rc_repo_listcontents.o src/libs6rc/s6rc_repo_listdeps.o src/libs6rc/s6rc_repo_listdeps_internal.o src/libs6rc/s6rc_repo_listsub.o src/libs6rc/s6rc_repo_lock.o src/libs6rc/s6rc_repo_makedefbundle.o src/libs6rc/s6rc_repo_makesetbundles.o src/libs6rc/s6rc_repo_moveservices.o src/libs6rc/s6rc_repo_refcompile.o src/libs6rc/s6rc_repo_setcompile.o src/libs6rc/s6rc_repo_sublist.o src/libs6rc/s6rc_repo_sync.o src/libs6rc/s6rc_sanitize_dir.o src/libs6rc/s6rc_servicedir_internal.o src/libs6rc/s6rc_servicedir_block.o src/libs6rc/s6rc_servicedir_unblock.o src/libs6rc/s6rc_servicedir_copy_offline.o src/libs6rc/s6rc_servicedir_copy_online.o src/libs6rc/s6rc_servicedir_manage.o src/libs6rc/s6rc_servicedir_unsupervise.o src/libs6rc/s6rc_strrefcmp.o src/libs6rc/s6rc_type_check.o
 else
-libs6rc.a.xyzzy:src/libs6rc/s6rc_db_check_depcycles.lo src/libs6rc/s6rc_db_check_pipelines.lo src/libs6rc/s6rc_db_check_revdeps.lo src/libs6rc/s6rc_db_read.lo src/libs6rc/s6rc_db_read_sizes.lo src/libs6rc/s6rc_db_read_uint32.lo src/libs6rc/s6rc_graph_closure.lo src/libs6rc/s6rc_live_state_size.lo src/libs6rc/s6rc_live_state_read.lo src/libs6rc/s6rc_livedir_canon.lo src/libs6rc/s6rc_livedir_create.lo src/libs6rc/s6rc_livedir_prefix.lo src/libs6rc/s6rc_livedir_prefixsize.lo src/libs6rc/s6rc_lock.lo src/libs6rc/s6rc_nlto0.lo src/libs6rc/s6rc_read_uint.lo src/libs6rc/s6rc_repo_cleanup.lo src/libs6rc/s6rc_repo_compile.lo src/libs6rc/s6rc_repo_fillset.lo src/libs6rc/s6rc_repo_listalldeps.lo src/libs6rc/s6rc_repo_listcontents.lo src/libs6rc/s6rc_repo_listdeps.lo src/libs6rc/s6rc_repo_listdeps_internal.lo src/libs6rc/s6rc_repo_listsub.lo src/libs6rc/s6rc_repo_lock.lo src/libs6rc/s6rc_repo_makedefbundle.lo src/libs6rc/s6rc_repo_makesetbundles.lo src/libs6rc/s6rc_repo_moveservices.lo src/libs6rc/s6rc_repo_refcompile.lo src/libs6rc/s6rc_repo_setcompile.lo src/libs6rc/s6rc_repo_sublist.lo src/libs6rc/s6rc_repo_sync.lo src/libs6rc/s6rc_sanitize_dir.lo src/libs6rc/s6rc_servicedir_internal.lo src/libs6rc/s6rc_servicedir_block.lo src/libs6rc/s6rc_servicedir_unblock.lo src/libs6rc/s6rc_servicedir_copy_offline.lo src/libs6rc/s6rc_servicedir_copy_online.lo src/libs6rc/s6rc_servicedir_manage.lo src/libs6rc/s6rc_servicedir_unsupervise.lo src/libs6rc/s6rc_type_check.lo
+libs6rc.a.xyzzy:src/libs6rc/s6rc_db_check_depcycles.lo src/libs6rc/s6rc_db_check_pipelines.lo src/libs6rc/s6rc_db_check_revdeps.lo src/libs6rc/s6rc_db_read.lo src/libs6rc/s6rc_db_read_sizes.lo src/libs6rc/s6rc_db_read_uint32.lo src/libs6rc/s6rc_graph_closure.lo src/libs6rc/s6rc_live_state_size.lo src/libs6rc/s6rc_live_state_read.lo src/libs6rc/s6rc_livedir_canon.lo src/libs6rc/s6rc_livedir_create.lo src/libs6rc/s6rc_livedir_prefix.lo src/libs6rc/s6rc_livedir_prefixsize.lo src/libs6rc/s6rc_lock.lo src/libs6rc/s6rc_nlto0.lo src/libs6rc/s6rc_read_uint.lo src/libs6rc/s6rc_repo_cleanup.lo src/libs6rc/s6rc_repo_compile.lo src/libs6rc/s6rc_repo_fillset.lo src/libs6rc/s6rc_repo_listalldeps.lo src/libs6rc/s6rc_repo_listcontents.lo src/libs6rc/s6rc_repo_listdeps.lo src/libs6rc/s6rc_repo_listdeps_internal.lo src/libs6rc/s6rc_repo_listsub.lo src/libs6rc/s6rc_repo_lock.lo src/libs6rc/s6rc_repo_makedefbundle.lo src/libs6rc/s6rc_repo_makesetbundles.lo src/libs6rc/s6rc_repo_moveservices.lo src/libs6rc/s6rc_repo_refcompile.lo src/libs6rc/s6rc_repo_setcompile.lo src/libs6rc/s6rc_repo_sublist.lo src/libs6rc/s6rc_repo_sync.lo src/libs6rc/s6rc_sanitize_dir.lo src/libs6rc/s6rc_servicedir_internal.lo src/libs6rc/s6rc_servicedir_block.lo src/libs6rc/s6rc_servicedir_unblock.lo src/libs6rc/s6rc_servicedir_copy_offline.lo src/libs6rc/s6rc_servicedir_copy_online.lo src/libs6rc/s6rc_servicedir_manage.lo src/libs6rc/s6rc_servicedir_unsupervise.lo src/libs6rc/s6rc_strrefcmp.lo src/libs6rc/s6rc_type_check.lo
 endif
 libs6rc.pc: EXTRA_LIBS := -ls6 -lskarnet ${SPAWN_LIB}
 libs6rc.so.xyzzy: EXTRA_LIBS := -ls6 -lskarnet ${SPAWN_LIB}
-libs6rc.so.xyzzy:src/libs6rc/s6rc_db_check_depcycles.lo src/libs6rc/s6rc_db_check_pipelines.lo src/libs6rc/s6rc_db_check_revdeps.lo src/libs6rc/s6rc_db_read.lo src/libs6rc/s6rc_db_read_sizes.lo src/libs6rc/s6rc_db_read_uint32.lo src/libs6rc/s6rc_graph_closure.lo src/libs6rc/s6rc_live_state_size.lo src/libs6rc/s6rc_live_state_read.lo src/libs6rc/s6rc_livedir_canon.lo src/libs6rc/s6rc_livedir_create.lo src/libs6rc/s6rc_livedir_prefix.lo src/libs6rc/s6rc_livedir_prefixsize.lo src/libs6rc/s6rc_lock.lo src/libs6rc/s6rc_nlto0.lo src/libs6rc/s6rc_read_uint.lo src/libs6rc/s6rc_repo_cleanup.lo src/libs6rc/s6rc_repo_compile.lo src/libs6rc/s6rc_repo_fillset.lo src/libs6rc/s6rc_repo_listalldeps.lo src/libs6rc/s6rc_repo_listcontents.lo src/libs6rc/s6rc_repo_listdeps.lo src/libs6rc/s6rc_repo_listdeps_internal.lo src/libs6rc/s6rc_repo_listsub.lo src/libs6rc/s6rc_repo_lock.lo src/libs6rc/s6rc_repo_makedefbundle.lo src/libs6rc/s6rc_repo_makesetbundles.lo src/libs6rc/s6rc_repo_moveservices.lo src/libs6rc/s6rc_repo_refcompile.lo src/libs6rc/s6rc_repo_setcompile.lo src/libs6rc/s6rc_repo_sublist.lo src/libs6rc/s6rc_repo_sync.lo src/libs6rc/s6rc_sanitize_dir.lo src/libs6rc/s6rc_servicedir_internal.lo src/libs6rc/s6rc_servicedir_block.lo src/libs6rc/s6rc_servicedir_unblock.lo src/libs6rc/s6rc_servicedir_copy_offline.lo src/libs6rc/s6rc_servicedir_copy_online.lo src/libs6rc/s6rc_servicedir_manage.lo src/libs6rc/s6rc_servicedir_unsupervise.lo src/libs6rc/s6rc_type_check.lo
+libs6rc.so.xyzzy:src/libs6rc/s6rc_db_check_depcycles.lo src/libs6rc/s6rc_db_check_pipelines.lo src/libs6rc/s6rc_db_check_revdeps.lo src/libs6rc/s6rc_db_read.lo src/libs6rc/s6rc_db_read_sizes.lo src/libs6rc/s6rc_db_read_uint32.lo src/libs6rc/s6rc_graph_closure.lo src/libs6rc/s6rc_live_state_size.lo src/libs6rc/s6rc_live_state_read.lo src/libs6rc/s6rc_livedir_canon.lo src/libs6rc/s6rc_livedir_create.lo src/libs6rc/s6rc_livedir_prefix.lo src/libs6rc/s6rc_livedir_prefixsize.lo src/libs6rc/s6rc_lock.lo src/libs6rc/s6rc_nlto0.lo src/libs6rc/s6rc_read_uint.lo src/libs6rc/s6rc_repo_cleanup.lo src/libs6rc/s6rc_repo_compile.lo src/libs6rc/s6rc_repo_fillset.lo src/libs6rc/s6rc_repo_listalldeps.lo src/libs6rc/s6rc_repo_listcontents.lo src/libs6rc/s6rc_repo_listdeps.lo src/libs6rc/s6rc_repo_listdeps_internal.lo src/libs6rc/s6rc_repo_listsub.lo src/libs6rc/s6rc_repo_lock.lo src/libs6rc/s6rc_repo_makedefbundle.lo src/libs6rc/s6rc_repo_makesetbundles.lo src/libs6rc/s6rc_repo_moveservices.lo src/libs6rc/s6rc_repo_refcompile.lo src/libs6rc/s6rc_repo_setcompile.lo src/libs6rc/s6rc_repo_sublist.lo src/libs6rc/s6rc_repo_sync.lo src/libs6rc/s6rc_sanitize_dir.lo src/libs6rc/s6rc_servicedir_internal.lo src/libs6rc/s6rc_servicedir_block.lo src/libs6rc/s6rc_servicedir_unblock.lo src/libs6rc/s6rc_servicedir_copy_offline.lo src/libs6rc/s6rc_servicedir_copy_online.lo src/libs6rc/s6rc_servicedir_manage.lo src/libs6rc/s6rc_servicedir_unsupervise.lo src/libs6rc/s6rc_strrefcmp.lo src/libs6rc/s6rc_type_check.lo
 libs6rc.dylib.xyzzy: EXTRA_LIBS := -ls6 -lskarnet ${SPAWN_LIB}
-libs6rc.dylib.xyzzy:src/libs6rc/s6rc_db_check_depcycles.lo src/libs6rc/s6rc_db_check_pipelines.lo src/libs6rc/s6rc_db_check_revdeps.lo src/libs6rc/s6rc_db_read.lo src/libs6rc/s6rc_db_read_sizes.lo src/libs6rc/s6rc_db_read_uint32.lo src/libs6rc/s6rc_graph_closure.lo src/libs6rc/s6rc_live_state_size.lo src/libs6rc/s6rc_live_state_read.lo src/libs6rc/s6rc_livedir_canon.lo src/libs6rc/s6rc_livedir_create.lo src/libs6rc/s6rc_livedir_prefix.lo src/libs6rc/s6rc_livedir_prefixsize.lo src/libs6rc/s6rc_lock.lo src/libs6rc/s6rc_nlto0.lo src/libs6rc/s6rc_read_uint.lo src/libs6rc/s6rc_repo_cleanup.lo src/libs6rc/s6rc_repo_compile.lo src/libs6rc/s6rc_repo_fillset.lo src/libs6rc/s6rc_repo_listalldeps.lo src/libs6rc/s6rc_repo_listcontents.lo src/libs6rc/s6rc_repo_listdeps.lo src/libs6rc/s6rc_repo_listdeps_internal.lo src/libs6rc/s6rc_repo_listsub.lo src/libs6rc/s6rc_repo_lock.lo src/libs6rc/s6rc_repo_makedefbundle.lo src/libs6rc/s6rc_repo_makesetbundles.lo src/libs6rc/s6rc_repo_moveservices.lo src/libs6rc/s6rc_repo_refcompile.lo src/libs6rc/s6rc_repo_setcompile.lo src/libs6rc/s6rc_repo_sublist.lo src/libs6rc/s6rc_repo_sync.lo src/libs6rc/s6rc_sanitize_dir.lo src/libs6rc/s6rc_servicedir_internal.lo src/libs6rc/s6rc_servicedir_block.lo src/libs6rc/s6rc_servicedir_unblock.lo src/libs6rc/s6rc_servicedir_copy_offline.lo src/libs6rc/s6rc_servicedir_copy_online.lo src/libs6rc/s6rc_servicedir_manage.lo src/libs6rc/s6rc_servicedir_unsupervise.lo src/libs6rc/s6rc_type_check.lo
+libs6rc.dylib.xyzzy:src/libs6rc/s6rc_db_check_depcycles.lo src/libs6rc/s6rc_db_check_pipelines.lo src/libs6rc/s6rc_db_check_revdeps.lo src/libs6rc/s6rc_db_read.lo src/libs6rc/s6rc_db_read_sizes.lo src/libs6rc/s6rc_db_read_uint32.lo src/libs6rc/s6rc_graph_closure.lo src/libs6rc/s6rc_live_state_size.lo src/libs6rc/s6rc_live_state_read.lo src/libs6rc/s6rc_livedir_canon.lo src/libs6rc/s6rc_livedir_create.lo src/libs6rc/s6rc_livedir_prefix.lo src/libs6rc/s6rc_livedir_prefixsize.lo src/libs6rc/s6rc_lock.lo src/libs6rc/s6rc_nlto0.lo src/libs6rc/s6rc_read_uint.lo src/libs6rc/s6rc_repo_cleanup.lo src/libs6rc/s6rc_repo_compile.lo src/libs6rc/s6rc_repo_fillset.lo src/libs6rc/s6rc_repo_listalldeps.lo src/libs6rc/s6rc_repo_listcontents.lo src/libs6rc/s6rc_repo_listdeps.lo src/libs6rc/s6rc_repo_listdeps_internal.lo src/libs6rc/s6rc_repo_listsub.lo src/libs6rc/s6rc_repo_lock.lo src/libs6rc/s6rc_repo_makedefbundle.lo src/libs6rc/s6rc_repo_makesetbundles.lo src/libs6rc/s6rc_repo_moveservices.lo src/libs6rc/s6rc_repo_refcompile.lo src/libs6rc/s6rc_repo_setcompile.lo src/libs6rc/s6rc_repo_sublist.lo src/libs6rc/s6rc_repo_sync.lo src/libs6rc/s6rc_sanitize_dir.lo src/libs6rc/s6rc_servicedir_internal.lo src/libs6rc/s6rc_servicedir_block.lo src/libs6rc/s6rc_servicedir_unblock.lo src/libs6rc/s6rc_servicedir_copy_offline.lo src/libs6rc/s6rc_servicedir_copy_online.lo src/libs6rc/s6rc_servicedir_manage.lo src/libs6rc/s6rc_servicedir_unsupervise.lo src/libs6rc/s6rc_strrefcmp.lo src/libs6rc/s6rc_type_check.lo
 s6-rc-repo-init: EXTRA_LIBS :=
 s6-rc-repo-init: src/repo/s6-rc-repo-init.o ${LIBS6RC} -lskarnet
 s6-rc-set-copy: EXTRA_LIBS :=
diff --git a/src/include/s6-rc/repo.h b/src/include/s6-rc/repo.h
index 6aa4618..2ad550d 100644
--- a/src/include/s6-rc/repo.h
+++ b/src/include/s6-rc/repo.h
@@ -10,7 +10,7 @@
 #include <skalibs/genalloc.h>
 
 extern char const s6rc_repo_sublist[3][7] ;
-extern int s6rc_repo_fillset (char const *, char const *) ;
+extern int s6rc_repo_fillset (char const *, char const *, char const *const *, size_t) ;
 
 extern int s6rc_repo_cleanup (char const *) ;
 extern int s6rc_repo_sync (char const *, char const *const *, size_t, unsigned int, char const *) ;
diff --git a/src/include/s6-rc/s6rc-utils.h b/src/include/s6-rc/s6rc-utils.h
index 362ca8a..af2ad88 100644
--- a/src/include/s6-rc/s6rc-utils.h
+++ b/src/include/s6-rc/s6rc-utils.h
@@ -11,6 +11,8 @@
 
 #include <s6-rc/s6rc-db.h>
 
+extern int s6rc_strrefcmp (void const *, void const *) ;
+
 extern void s6rc_graph_closure (s6rc_db_t const *, unsigned char *, unsigned int, int) ;
 extern int s6rc_lock (char const *, int, int *, char const *, int, int *, int) ;
 extern int s6rc_read_uint (char const *, unsigned int *) ;
diff --git a/src/libs6rc/deps-lib/s6rc b/src/libs6rc/deps-lib/s6rc
index 6107d4b..4af4acb 100644
--- a/src/libs6rc/deps-lib/s6rc
+++ b/src/libs6rc/deps-lib/s6rc
@@ -38,6 +38,7 @@ s6rc_servicedir_copy_offline.o
 s6rc_servicedir_copy_online.o
 s6rc_servicedir_manage.o
 s6rc_servicedir_unsupervise.o
+s6rc_strrefcmp.o
 s6rc_type_check.o
 -ls6
 -lskarnet
diff --git a/src/libs6rc/s6rc_repo_fillset.c b/src/libs6rc/s6rc_repo_fillset.c
index 9548c19..50c0156 100644
--- a/src/libs6rc/s6rc_repo_fillset.c
+++ b/src/libs6rc/s6rc_repo_fillset.c
@@ -2,14 +2,16 @@
 
 #include <string.h>
 #include <unistd.h>
+#include <stdlib.h>
 #include <errno.h>
 
 #include <skalibs/direntry.h>
 #include <skalibs/strerr.h>
 
+#include <s6-rc/s6rc-utils.h>
 #include <s6-rc/repo.h>
 
-int s6rc_repo_fillset (char const *repo, char const *set)
+int s6rc_repo_fillset (char const *repo, char const *set, char const *const *existing, size_t n)
 {
   size_t repolen = strlen(repo) ;
   size_t setlen = strlen(set) ;
@@ -42,7 +44,8 @@ int s6rc_repo_fillset (char const *repo, char const *set)
     char src[len + 30] ;
     char dst[repolen + 18 + setlen + len] ;
     memcpy(src, "../.atomics/", 12) ;
-    memcpy(src + 12, d->d_name, len) ;
+    memcpy(src + 12, d->d_name, len+1) ;
+    if (n && bsearch(&d->d_name, existing, n, sizeof(char const *), &s6rc_strrefcmp)) continue ;
     memcpy(src + 12 + len, "/flag-essential", 16) ;
     if (access(src, F_OK) == -1)
     {
diff --git a/src/libs6rc/s6rc_repo_makesetbundles.c b/src/libs6rc/s6rc_repo_makesetbundles.c
index 30ff29e..8fcf979 100644
--- a/src/libs6rc/s6rc_repo_makesetbundles.c
+++ b/src/libs6rc/s6rc_repo_makesetbundles.c
@@ -14,13 +14,9 @@
 #include <skalibs/genalloc.h>
 #include <skalibs/djbunix.h>
 
+#include <s6-rc/s6rc-utils.h>
 #include <s6-rc/repo.h>
 
-static int str_ref_cmp (void const *a, void const *b)
-{
-  return strcmp(*(char const *const *)a, *(char const *const *)b) ;
-}
-
 int s6rc_repo_makesetbundles (char const *repo, char const *set, unsigned int verbosity)
 {
   size_t repolen = strlen(repo) ;
@@ -49,7 +45,7 @@ int s6rc_repo_makesetbundles (char const *repo, char const *set, unsigned int ve
     for (size_t i = 0 ; i < n ; i++) masked[i] = maskedstorage + genalloc_s(size_t, &ga)[i] ;
     sa.len = 0 ;
     genalloc_setlen(size_t, &ga, 0) ;
-    qsort(masked, n, sizeof(char const *), &str_ref_cmp) ;
+    qsort(masked, n, sizeof(char const *), &s6rc_strrefcmp) ;
 
     if (mkdir(dst, 02755) == -1)
     {
@@ -83,7 +79,7 @@ int s6rc_repo_makesetbundles (char const *repo, char const *set, unsigned int ve
       for (; i < m ; i++)
       {
         char const *x = sa.s + genalloc_s(size_t, &ga)[i] ;
-        if (bsearch(x, masked, n, sizeof(char const *), &str_ref_cmp))
+        if (bsearch(x, masked, n, sizeof(char const *), &s6rc_strrefcmp))
         {
           if (verbosity >= 3)
             strerr_warni4x("skipping bundle ", d->d_name, " containing e.g. masked service ", x) ;
diff --git a/src/libs6rc/s6rc_repo_sync.c b/src/libs6rc/s6rc_repo_sync.c
index 8ff1137..e3d71fd 100644
--- a/src/libs6rc/s6rc_repo_sync.c
+++ b/src/libs6rc/s6rc_repo_sync.c
@@ -27,7 +27,7 @@ static inline void cleanup (char const *ato, char const *bun)
   errno = e ;
 }
 
-static int s6rc_repo_syncsub (char const *repo, char const *set, char const *sub, uint32_t where, stralloc *sa, genalloc *ga, unsigned int verbosity)
+static int unlink_stales_in_sub (char const *repo, char const *set, char const *sub, uint32_t where, stralloc *sa, genalloc *ga, unsigned int verbosity)
 {
   size_t repolen = strlen(repo) ;
   size_t setlen = strlen(set) ;
@@ -91,14 +91,14 @@ static int s6rc_repo_syncsub (char const *repo, char const *set, char const *sub
 
 static inline int s6rc_repo_syncset (char const *repo, size_t repolen, char const *set, stralloc *sa, genalloc *ga, unsigned int verbosity)
 {
-  static char const subs[3][7] = { "masked", "active", "onboot" } ;
   for (unsigned int i = 0 ; i < 3 ; i++)
-    if (s6rc_repo_syncsub(repo, set, subs[i], i, sa, ga, verbosity)) goto err ;
+    if (unlink_stales_in_sub(repo, set, s6rc_repo_sublist[i], i, sa, ga, verbosity)) goto err ;
 
-  size_t n = genalloc_len(size_t, ga) ;
-  if (!n)
   {
-    if (!s6rc_repo_fillset(repo, set)) goto err ;
+    size_t n = genalloc_len(size_t, ga) ;
+    char const *stillhere[n + !n] ;
+    for (size_t i = 0 ; i < n ; i++) stillhere[i] = sa->s + genalloc_s(size_t, ga)[i] ;
+    if (!s6rc_repo_fillset(repo, set, stillhere, n)) goto err ;
   }
 
   sa->len = 0 ;
diff --git a/src/libs6rc/s6rc_strrefcmp.c b/src/libs6rc/s6rc_strrefcmp.c
new file mode 100644
index 0000000..e4732df
--- /dev/null
+++ b/src/libs6rc/s6rc_strrefcmp.c
@@ -0,0 +1,10 @@
+/* ISC license. */
+
+#include <string.h>
+
+#include <s6-rc/s6rc-utils.h>
+
+int s6rc_strrefcmp (void const *a, void const *b)
+{
+  return strcmp(*(char const *const *)a, *(char const *const *)b) ;
+}
diff --git a/src/repo/s6-rc-set-new.c b/src/repo/s6-rc-set-new.c
index dc693b6..de62676 100644
--- a/src/repo/s6-rc-set-new.c
+++ b/src/repo/s6-rc-set-new.c
@@ -65,7 +65,7 @@ static inline void newset (char const *repo, char const *setname)
     }
   }
 
-  if (s6rc_repo_fillset(repo, tmp + repolen + 9))
+  if (s6rc_repo_fillset(repo, tmp + repolen + 9, 0, 0))
   {
     cleanup(tmp) ;
     _exit(111) ;